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This procedure describes how you should replace an STK1002 or STK1006 daughter board with an STK1005. The examples bellow will use STK1002, but the exactly same can be perfomed on an STK1006.
In order to go through this procedure you need the STK1005 binaries. If you are using the AVR32 Linux BSP DVD, you will find everything under BSP-DVD/buildroot/binaries/stk1005. If you do not have this DVD you can download the STK1005 binaries from www.atmel.com.
You also need to have the AVR32 GNU Toolchain installed or you can use the AVR32 Ubuntu VMware image.
The first thing you need to do when upgrading your STK1000 with STK1005 and AP7200, is to upgrade the U-Boot bootloader stored on the STK1000 board.
avr32program
to program the bootloader
cd your_local_host/buildroot/binaries/stk1005 sudo avr32program program –vefcfi@0 u-boot.bin
sudo minicom /dev/ttyUSB0
Please follow the system upgrade procedure in order to upgrade the kernel and filesystem.