Package: hopach
Description: The HOPACH clustering algorithm builds a hierarchical
tree of clusters by recursively partitioning a data set, while
ordering and possibly collapsing clusters at each level. The
algorithm uses the Mean/Median Split Silhouette (MSS) criteria
to identify the level of the tree with maximally homogeneous
clusters. It also runs the tree down to produce a final
ordered list of the elements. The non-parametric bootstrap
allows one to estimate the probability that each element
belongs to each cluster (fuzzy clustering). Functions for
writing output files that can be read by gene clustering
viewers (e.g.: TreeView, MapleTree, GeneXPress) are included.
Version: 1.0
Author: Katherine S. Pollard , with Mark J. van
der Laan .
Maintainer: Katherine S. Pollard
Dependencies: R (>= 1.8.0), cluster, Biobase
Suggests: None
SystemRequirements: None
License: GPL version 2 or newer
URL: http://www.r-project.org, http://www.stat.berkeley.edu/~laan/,
http://sourceforge.net/project/showfiles.php?group_id=71407&package_id=70959,
http://sourceforge.net/projects/mapletree,
http://genetics.stanford.edu/~alok/TreeView/
Win32 package download