SAM and Efron's empirical Bayes approaches


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Documentation for package `siggenes' version 1.2.11

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args.sam Argument list for SAM-specific methods
delta.plot Delta Plots
ebam Empirical Bayes Analysis of Microarrays
ebam.wilc Empirical Bayes Analysis using Wilcoxon Rank Sums
find.a0 Computation of the Fudge Factor
fudge2 Fudge Factor
identify,SAM-method Class SAM
list.siggenes List of the significant genes
na.handling Handling of Missing Values
na.replace.cont Replacing of Missing Values in Continuous Data
na.replace.dist Handling of Missing Values in Categorical Data
pi0.est Estimation of the prior probability
plot,SAM-method Class SAM
print,SAM-method Class SAM
qvalue.cal Computation of the q-value
SAM Class SAM
sam Significance Analysis of Microarray
SAM-class Class SAM
sam.dstat SAM Analysis Using a Modified t-statistic
sam.plot2 SAM Plot
sam.snp SAM Analysis for Categorical Data
sam.wilc SAM Analysis Using Wilcoxon Rank Statistics
show,SAM-method Class SAM
summary,SAM-method Class SAM