affectationGNL {GLAD} | R Documentation |
The function affectation.profileCGH
gives a status (gained,
normal or lost) to each BAC.
affectationGNL.profileCGH(profileCGH, alpha=0.001, region="Region", verbose=FALSE, ...)
profileCGH |
Object of class profileCGH . |
alpha |
Outlier detected in lost or gained region that lie between the α/2 lower tail and the α/2 upper tail of the estimated distribution of the normal DNA population are considered as normal. |
region |
Specifies the name of the variable which has been used during the MSHR clustering by chromosome step. |
verbose |
If TRUE some information are printed |
... |
An object of class profileCGH
with the following added information in
the data.frame attribute profileValues
:
ZoneGNL |
Gain is coded by 1, Loss by -1 and Normal by 0. |
Philippe Hupé, Philippe.Hupe@curie.fr.
glad
.